3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03847

Details:

PFam ID : PF03847

PFam Domain Description : Transcription initiation factor TFIID subunit A

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 113

Average sequence length: 67.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03847	B5DJ72_DROPS_47_113	45.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03847	B0ELF7_ENTDI_33_101	100

Sequence based PCA Plot of the family - PF03847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay