3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03843

Details:

PFam ID : PF03843

PFam Domain Description : Outer membrane lipoprotein Slp family

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 168

Average sequence length: 155.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03843	D2YNJ5_VIBMI_5_114	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03843	D5C4X9_NITHN_15_186	100

Sequence based PCA Plot of the family - PF03843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=85 Length=8
Motif2 Start=62 Length=8
Motif3 Start=95 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay