3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03841

Details:

PFam ID : PF03841

PFam Domain Description : L-seryl-tRNA selenium transferase

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 493

Average sequence length: 314.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03841	A9BET0_PETMO_6_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03841	E8X6Y7_ACISM_54_326	99.7

Sequence based PCA Plot of the family - PF03841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay