3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03839

Details:

PFam ID : PF03839

PFam Domain Description : Translocation protein Sec62

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 155

Average sequence length: 193.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03839	E4YYL5_OIKDI_44_249	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03839	C1M2R6_SCHMA_92_322	98.7

Sequence based PCA Plot of the family - PF03839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=200 Length=8
Motif3 Start=186 Length=11
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay