3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03834

Details:

PFam ID : PF03834

PFam Domain Description : Binding domain of DNA repair protein Ercc1 (rad10/Swi10)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 113

Average sequence length: 67.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03834	C3Y937_BRAFL_238_288	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03834	D2W2Q9_NAEGR_228_298	100

Sequence based PCA Plot of the family - PF03834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=11
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=45 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay