3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03833

Details:

PFam ID : PF03833

PFam Domain Description : DNA polymerase II large subunit DP2

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 77

Average sequence length: 806.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03833	D2RRT5_HALTV_6_600	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03833	DP2L_NANEQ_1_990	100

Sequence based PCA Plot of the family - PF03833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=21 Length=8
Motif3 Start=108 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay