3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03828

Details:

PFam ID : PF03828

PFam Domain Description : Cid1 family poly A polymerase

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 472

Average sequence length: 61.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03828	B7G5X4_PHATC_302_356	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03828	A2FBH0_TRIVA_227_285	100

Sequence based PCA Plot of the family - PF03828 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=18
Motif2 Start=2 Length=8
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay