3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03825

Details:

PFam ID : PF03825

PFam Domain Description : Nucleoside H+ symporter

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 319

Average sequence length: 354.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03825	A6C3G0_9PLAN_14_458	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03825	A6C3G0_9PLAN_14_458	100

Sequence based PCA Plot of the family - PF03825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay