3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03824

Details:

PFam ID : PF03824

PFam Domain Description : High-affinity nickel-transport protein

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 710

Average sequence length: 225.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03824	D7T0R5_VITVI_2_47	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03824	D0N1C8_PHYIT_20_314	98.7

Sequence based PCA Plot of the family - PF03824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=8
Motif3 Start=15 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay