3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03823

Details:

PFam ID : PF03823

PFam Domain Description : Neurokinin B

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 9

Average sequence length: 50.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03823	D7T0R5_VITVI_2_47	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03823	TKNK_RAT_1_55	100

Sequence based PCA Plot of the family - PF03823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay