3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03821

Details:

PFam ID : PF03821

PFam Domain Description : Golgi 4-transmembrane spanning transporter

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 46

Average sequence length: 170.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03821	B3S2D1_TRIAD_38_222	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03821	Q5XK74_XENLA_13_218	100

Sequence based PCA Plot of the family - PF03821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay