3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03820

Details:

PFam ID : PF03820

PFam Domain Description : Tricarboxylate carrier

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 250

Average sequence length: 262.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03820	A8P428_BRUMA_1_38	60.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03820	E9AKH4_LEIME_22_346	100

Sequence based PCA Plot of the family - PF03820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=106 Length=8
Motif2 Start=194 Length=8
Motif3 Start=317 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay