3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03816

Details:

PFam ID : PF03816

PFam Domain Description : Cell envelope-related transcriptional attenuator domain

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 1655

Average sequence length: 154.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03816	Q4TCR1_TETNG_1_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03816	E6S7G8_INTC7_206_407	100

Sequence based PCA Plot of the family - PF03816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=11
Motif2 Start=37 Length=8
Motif3 Start=115 Length=17
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay