3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03815

Details:

PFam ID : PF03815

PFam Domain Description : LCCL domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 284

Average sequence length: 103.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03815	Q4TCR1_TETNG_1_53	94.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03815	Q6C123_YARLI_53_197	100

Sequence based PCA Plot of the family - PF03815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=90 Length=11
Motif4 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay