3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03813

Details:

PFam ID : PF03813

PFam Domain Description : Nrap protein

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 222

Average sequence length: 628.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03813	A4H9K4_LEIBR_260_1037	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03813	E1GD65_LOALO_1_281	100

Sequence based PCA Plot of the family - PF03813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=166 Length=8
Motif2 Start=196 Length=8
Motif3 Start=406 Length=8
Motif4 Start=28 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay