3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03812

Details:

PFam ID : PF03812

PFam Domain Description : 2-keto-3-deoxygluconate permease

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 127

Average sequence length: 299.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03812	B7MQZ9_ECO81_15_63	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03812	D4YIZ9_9LACT_1_312	100

Sequence based PCA Plot of the family - PF03812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay