3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03808

Details:

PFam ID : PF03808

PFam Domain Description : Glycosyl transferase WecB/TagA/CpsF family

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 729

Average sequence length: 170.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03808	C5EER0_9FIRM_8_98	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03808	Q2IHI6_ANADE_71_256	100

Sequence based PCA Plot of the family - PF03808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=99 Length=8
Motif3 Start=30 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay