3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03807

Details:

PFam ID : PF03807

PFam Domain Description : NADP oxidoreductase coenzyme F420-dependent

Number of Sequence in 50% Dataset : 560

Number of Sequence in Full Dataset : 2413

Average sequence length: 93.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03807	C5EER0_9FIRM_8_98	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03807	D5NEX6_9BURK_2_59	100

Sequence based PCA Plot of the family - PF03807 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=20
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay