3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03806

Details:

PFam ID : PF03806

PFam Domain Description : AbgT putative transporter family

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 329

Average sequence length: 430.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03806	C5BXH3_BEUC1_15_551	68.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03806	C5BXH3_BEUC1_15_551	100

Sequence based PCA Plot of the family - PF03806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=31
Motif2 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay