3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03805

Details:

PFam ID : PF03805

PFam Domain Description : Cytoadherence-linked asexual protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 52

Average sequence length: 419.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03805	Q4Y449_PLACH_1_537	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03805	Q4YW88_PLABA_1_544	98.0

Sequence based PCA Plot of the family - PF03805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay