3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03802

Details:

PFam ID : PF03802

PFam Domain Description : Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 154

Average sequence length: 161.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03802	CITG_HAEDU_1_35	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03802	C9BRR8_ENTFC_7_180	100

Sequence based PCA Plot of the family - PF03802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=8 Length=8
Motif3 Start=135 Length=8
Motif4 Start=103 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay