3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03801

Details:

PFam ID : PF03801

PFam Domain Description : HEC/Ndc80p family

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 160

Average sequence length: 157.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03801	F0VGN0_NEOCA_198_256	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03801	F0J9L4_AMBVA_20_212	100

Sequence based PCA Plot of the family - PF03801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay