3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03799

Details:

PFam ID : PF03799

PFam Domain Description : Cell division protein FtsQ

Number of Sequence in 50% Dataset : 297

Number of Sequence in Full Dataset : 754

Average sequence length: 117.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03799	A8B824_9RICK_330_443	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03799	Q0EYH8_9PROT_120_234	95.8

Sequence based PCA Plot of the family - PF03799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=27
Motif2 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay