3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03798

Details:

PFam ID : PF03798

PFam Domain Description : TLC domain

Number of Sequence in 50% Dataset : 296

Number of Sequence in Full Dataset : 896

Average sequence length: 191.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03798	A8B824_9RICK_330_443	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03798	D8LSQ8_ECTSI_67_252	98.7

Sequence based PCA Plot of the family - PF03798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=117 Length=11
Motif3 Start=57 Length=8
Motif4 Start=196 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay