3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03797

Details:

PFam ID : PF03797

PFam Domain Description : Autotransporter beta-domain

Number of Sequence in 50% Dataset : 695

Number of Sequence in Full Dataset : 1564

Average sequence length: 250.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03797	A8B824_9RICK_330_443	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03797	E6YBM1_9RICK_2_139	98.5

Sequence based PCA Plot of the family - PF03797 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay