3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03796

Details:

PFam ID : PF03796

PFam Domain Description : DnaB-like helicase C terminal domain

Number of Sequence in 50% Dataset : 236

Number of Sequence in Full Dataset : 1471

Average sequence length: 243.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03796	Q66LU6_BPT5_186_300	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03796	Q5FNI4_GLUOX_199_502	100

Sequence based PCA Plot of the family - PF03796 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=146 Length=11
Motif2 Start=273 Length=14
Motif3 Start=165 Length=71
Motif4 Start=14 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay