3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03795

Details:

PFam ID : PF03795

PFam Domain Description : YCII-related domain

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 1744

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03795	B7QUX0_9RHOB_2_45	61.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03795	E0MT83_9RHOB_1_57	99.8

Sequence based PCA Plot of the family - PF03795 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=17 Length=18
Motif3 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay