3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03791

Details:

PFam ID : PF03791

PFam Domain Description : KNOX2 domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 150

Average sequence length: 50.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03791	B7E4V5_ORYSJ_1_38	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03791	Q9SWA3_ACEAT_110_161	100

Sequence based PCA Plot of the family - PF03791 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay