3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03790

Details:

PFam ID : PF03790

PFam Domain Description : KNOX1 domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 161

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03790	A9RX56_PHYPA_181_224	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03790	A9RX56_PHYPA_181_224	98.7

Sequence based PCA Plot of the family - PF03790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay