3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03789

Details:

PFam ID : PF03789

PFam Domain Description : ELK domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 75

Average sequence length: 21.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03789	D8DST8_PREBR_1_307	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03789	Q94G15_9BRYO_375_396	75

Sequence based PCA Plot of the family - PF03789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay