3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03788

Details:

PFam ID : PF03788

PFam Domain Description : LrgA family

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 603

Average sequence length: 95.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03788	D8DST8_PREBR_1_307	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03788	B1J7U6_PSEPW_11_114	100

Sequence based PCA Plot of the family - PF03788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=13 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay