3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03786

Details:

PFam ID : PF03786

PFam Domain Description : D-mannonate dehydratase (UxuA)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 373

Average sequence length: 312.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03786	D8DST8_PREBR_1_307	58.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03786	B8R4I4_9MYCO_1_343	99.7

Sequence based PCA Plot of the family - PF03786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=14
Motif2 Start=273 Length=11
Motif3 Start=316 Length=8
Motif4 Start=199 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay