3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03784

Details:

PFam ID : PF03784

PFam Domain Description : Cyclotide family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 108

Average sequence length: 29.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03784	Q30CA8_HYBFL_1_23	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03784	Q30CA8_HYBFL_1_23	95.3

Sequence based PCA Plot of the family - PF03784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay