3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03783

Details:

PFam ID : PF03783

PFam Domain Description : Curli production assembly/transport component CsgG

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 327

Average sequence length: 175.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03783	B9XQI5_9BACT_159_262	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03783	E7TE17_SHIFL_19_136	99.6

Sequence based PCA Plot of the family - PF03783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=86 Length=8
Motif2 Start=9 Length=18
Motif3 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay