3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03782

Details:

PFam ID : PF03782

PFam Domain Description : AMOP domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 55

Average sequence length: 142.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03782	C3YIN5_BRAFL_251_311	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03782	E5S2G7_TRISP_593_681	98.1

Sequence based PCA Plot of the family - PF03782 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=71 Length=8
Motif3 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay