3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03781

Details:

PFam ID : PF03781

PFam Domain Description : Fibroblast growth factor

Number of Sequence in 50% Dataset : 570

Number of Sequence in Full Dataset : 2370

Average sequence length: 225.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03781	Q11QW0_CYTH3_24_223	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03781	D0LV07_HALO1_1057_1385	100

Sequence based PCA Plot of the family - PF03781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=37 Length=27
Motif2 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay