3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03780

Details:

PFam ID : PF03780

PFam Domain Description : Asp23 family

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 956

Average sequence length: 103.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03780	Q1QFK2_NITHX_12_59	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03780	D2RJB8_ACIFV_2_120	100

Sequence based PCA Plot of the family - PF03780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=8
Motif2 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay