3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03770

Details:

PFam ID : PF03770

PFam Domain Description : Inositol polyphosphate kinase

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 438

Average sequence length: 211.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03770	B6ABT8_CRYMR_161_413	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03770	E0VZ33_PEDHC_328_724	100

Sequence based PCA Plot of the family - PF03770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8
Motif3 Start=382 Length=11
Motif4 Start=356 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay