3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03765

Details:

PFam ID : PF03765

PFam Domain Description : CRAL/TRIO, N-terminal domain

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 856

Average sequence length: 55.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03765	A9SRX2_PHYPA_369_447	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03765	C1MXI1_MICPC_6_62	99.4

Sequence based PCA Plot of the family - PF03765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay