3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03764

Details:

PFam ID : PF03764

PFam Domain Description : Elongation factor G, domain IV

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 2165

Average sequence length: 116.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03764	A9SRX2_PHYPA_369_447	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03764	C5LW49_9ALVE_3_83	99.6

Sequence based PCA Plot of the family - PF03764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=50 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay