3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03762

Details:

PFam ID : PF03762

PFam Domain Description : Vitelline membrane outer layer protein I (VOMI)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 64

Average sequence length: 145.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03762	O16692_CAEEL_92_139	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03762	Q9TYM7_CAEEL_57_244	100

Sequence based PCA Plot of the family - PF03762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay