3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03755

Details:

PFam ID : PF03755

PFam Domain Description : YicC-like family, N-terminal region

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 746

Average sequence length: 155.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03755	E8R228_ISOPI_2_174	99.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03755	E8R228_ISOPI_2_174	100

Sequence based PCA Plot of the family - PF03755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=58 Length=8
Motif2 Start=22 Length=11
Motif3 Start=163 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay