3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03754

Details:

PFam ID : PF03754

PFam Domain Description : Domain of unknown function (DUF313)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 61

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03754	O56301_9BETA_83_1199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03754	B9IQC7_POPTR_181_304	100

Sequence based PCA Plot of the family - PF03754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay