3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03753

Details:

PFam ID : PF03753

PFam Domain Description : Human herpesvirus 6 immediate early protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 8

Average sequence length: 380.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03753	O56301_9BETA_83_1199	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03753	Q6XA63_9BETA_516_941	100

Sequence based PCA Plot of the family - PF03753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=5 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay