3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03748

Details:

PFam ID : PF03748

PFam Domain Description : Hypothetical protein FLILHELTA

Number of Sequence in 50% Dataset : 237

Number of Sequence in Full Dataset : 719

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03748	D8G7B8_9CYAN_11_338	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03748	Q0ATN5_MARMM_51_109	99.5

Sequence based PCA Plot of the family - PF03748 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=3 Length=21
Motif3 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay