3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03746

Details:

PFam ID : PF03746

PFam Domain Description : LamB/YcsF family

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 658

Average sequence length: 234.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03746	Q5V3A0_HALMA_33_97	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03746	Q7P3L1_FUSNV_4_73	100

Sequence based PCA Plot of the family - PF03746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=14
Motif2 Start=228 Length=8
Motif3 Start=3 Length=8
Motif4 Start=109 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay