3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03745

Details:

PFam ID : PF03745

PFam Domain Description : Domain of unknown function (DUF309)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 272

Average sequence length: 61.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03745	Q5V3A0_HALMA_33_97	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03745	D1B0H1_SULD5_2_68	100

Sequence based PCA Plot of the family - PF03745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=37 Length=18
Motif2 Start=16 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay