3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03744

Details:

PFam ID : PF03744

PFam Domain Description : 6-carboxyhexanoate--CoA ligase

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 66

Average sequence length: 225.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03744	D4KFB5_9FIRM_3_158	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03744	C4LK80_CORK4_3_264	100

Sequence based PCA Plot of the family - PF03744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=220 Length=8
Motif2 Start=130 Length=8
Motif3 Start=35 Length=8
Motif4 Start=199 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay