3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03743

Details:

PFam ID : PF03743

PFam Domain Description : Bacterial conjugation TrbI-like protein

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 600

Average sequence length: 178.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03743	E0XGL7_9POAL_1_18	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03743	D8G1D0_9CYAN_101_316	99.8

Sequence based PCA Plot of the family - PF03743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay