3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03741

Details:

PFam ID : PF03741

PFam Domain Description : Integral membrane protein TerC family

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 1375

Average sequence length: 190.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03741	D2QXL0_PIRSD_29_258	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03741	F2UCG3_9EUKA_404_671	100

Sequence based PCA Plot of the family - PF03741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay